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    ribc2 RIB43A domain with coiled-coils 2 [ Danio rerio (zebrafish) ]

    Gene ID: 568595, updated on 27-Mar-2024

    Summary

    Official Symbol
    ribc2provided by ZNC
    Official Full Name
    RIB43A domain with coiled-coils 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050411-27
    See related
    Ensembl:ENSDARG00000075177 AllianceGenome:ZFIN:ZDB-GENE-050411-27
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7139664; zgc:171573
    Summary
    Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; otic vesicle; and pronephric duct. Orthologous to human RIBC2 (RIB43A domain with coiled-coils 2). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    Location:
    chromosome: 25
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (16747594..16755340, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (16651194..16658940, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1 Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    RIB43A-like with coiled-coils protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243149.1NP_001230078.1  RIB43A-like with coiled-coils protein 2

      Status: VALIDATED

      Source sequence(s)
      BX004976, CT732545, EH436182
      UniProtKB/TrEMBL
      A0A8M1NYQ7, E7F099
      Related
      ENSDARP00000109190.1, ENSDART00000124729.4
      Conserved Domains (1) summary
      pfam05914
      Location:4367
      RIB43A; RIB43A

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      16747594..16755340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)